Huygens Remote Manager
Installation instructions
Conventions
Using
sudo
Operating systems
Variables
Get the HRM
Current version
Download installation script
Download standard archive
Clone git repository
Automated installation
Manual installation
Install the prerequisites
Operating system
Huygens Core
Apache2 web server
PHP ≥ 5.3
A relational database
(Optional) LDAP support
Sendmail (postfix)
SSH
Compressors
(Optional) OMERO support
Install the HRM
Configure the HRM
Mandatory configuration steps
Optional configuration steps
Configure the HRM (multi-server)
Configuration steps
Version upgrade
Stop the Queue Manager
Download and extract the new HRM release
Cleaning up leftover files from previous installations
3.1 to 3.2
Upgrade the init script
Update the data folder permissions
Update the configuration files
3.1 to 3.2
3.0.x to 3.1
2.1.x to 3.0
1.2.x to 2.0
Check the configuration files
Update the database
Updating from the web interface
Updating from the console
Re-start the Queue Manager
User manual
Introduction
What is HRM
Who makes HRM
Where to find HRM
Getting started
Create an account in HRM
Upload a raw image
Deconvolve
Queue
Results
Tips & Tricks
Advanced deconvolution in HRM
The Home panel
Launch a job
Select images (1/5)
The Image Parameters (2/5)
The Restoration Parameters (3/5)
Analysis parameters (4/5)
Launch the job (5/5)
The Queue status
Results: detailed view
Comparing MIPs
Comparing SFPs
Comparing Z Slices
Comparing T frames
Z, T and T-SFP movies
Colocalization
Parameter summaries
Huygens log
Tips & Tricks
Other features in HRM
Communication with an OMERO server
Statistics
Account
The role of the administrator in HRM
Technical features
Installation and requirements
Administrator’s options
Version upgrade
Database update
System configuration
How HRM communicates with Huygens Core
Tips & Tricks
Huygens Remote Manager
Docs
»
User manual
Edit on GitHub
User manual
¶
These are the detailed instructions for the Huygens Remote Manager User Manual.
Introduction
What is HRM
Who makes HRM
Where to find HRM
Getting started
Create an account in HRM
Upload a raw image
Deconvolve
Queue
Results
Tips & Tricks
Advanced deconvolution in HRM
The Home panel
Launch a job
Select images (1/5)
The Image Parameters (2/5)
The Restoration Parameters (3/5)
Analysis parameters (4/5)
Launch the job (5/5)
The Queue status
Results: detailed view
Comparing MIPs
Comparing SFPs
Comparing Z Slices
Comparing T frames
Z, T and T-SFP movies
Colocalization
Parameter summaries
Huygens log
Tips & Tricks
Other features in HRM
Communication with an OMERO server
Statistics
Account
The role of the administrator in HRM
Technical features
Installation and requirements
Administrator’s options
Version upgrade
Database update
System configuration
How HRM communicates with Huygens Core
Tips & Tricks
Read the Docs
v: 3.2.2
Versions
latest
3.2.2
3.2.1
3.2.0
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